Tools
=====

BioNeuralNet provides a suite of tools to integrate omics data with neural network embeddings. Below are some basic usage examples to help you get started.

.. toctree::
   :maxdepth: 2
   :caption: Usage Examples

   Graph_Construction
   Graph_Clustering
   Graph_Embedding
   Subject_Representation
   Disease_Prediction
   Analysis_and_Visualization

By following these tutorials, you can gain insight into how BioNeuralNet's modules interoperate 
to produce meaningful multi-omics analyses and ready-to-use data for downstream tasks such as disease 
prediction or feature selection.